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MutationEnrichment
— Sample pathway enrichment
Select workflow inputs to show
MutationEnrichment
Sequence
database
kegg
go_bp
go_mf
go_cc
pfam
interpro
reactome
nature
biocarta
pina
gene_ages
corum
MSigDB_c1_all
MSigDB_c2_all
MSigDB_c2_cgp
MSigDB_c2_cp
MSigDB_c2_cp_biocarta
MSigDB_c2_cp_kegg
MSigDB_c2_cp_reactome
MSigDB_c3_all
MSigDB_c3_mir
MSigDB_c3_tft
MSigDB_c4_all
MSigDB_c4_cgn
MSigDB_c4_cm
MSigDB_c5_all
MSigDB_c5_bp
MSigDB_c5_cc
MSigDB_c5_mf
MSigDB_c6_all
MSigDB_c7_all
MSigDB_h_all
MSigDB_msigdb
baseline
(default: pathway_base_counts)
pathway_base_counts
pathway_gene_counts
mutations
or use the text area below (you may use ',' intead of tabs)
permutations
(default: 10000)
fdr
(default: true)
masked_genes
or use the text area below
organism
(default: Hsa/feb2014)
watson
(default: true)
vcf
(default: false)
principal
(default: false)
non_synonymous
(default: false)
coding
(default: false)
Input file bundle in tar.gz (overrides page inputs)
html
json
raw
binary
Click to load example data:
CLL
