WorkflowExplorer

Workflows

Immunomics

Sample

HTS

Sequence

organism (default: Hsa/may2017)

reference (default: hg38)

caller (default: mutect2)

by_group (default: false)

bazam (default: false)

skip_rescore (default: false)

interval_listor use the text area below

known_sitesor use the text area below

skip_duplicates (default: false)

type_of_sequencing

bwa_mem_args (default: -M -p -K 1000000 -v 0)

remove_unpaired (default: false)

skip_mark_adapters (default: false)

read_group_name

sample_name

library_name (default: DefaultLibraryName)

platform_unit (default: DefaultPlatformUnit)

platform (default: DefaultPlatform)

sequencing_center (default: DefaultSequencingCenter)

pileup_germline_resourceor use the text area below

interval_padding (default: 50)

panel_of_normalsor use the text area below

germline_resourceor use the text area below

af_not_in_resource

remove_soft_clip (default: false)

max_mnp_distance (default: 1)

quality

filtersor use the text area below

principal (default: false)

sizesor use the text area below

flank_size (default: 20)

Input file bundle in tar.gz (overrides page inputs)